AT2G32310.2
without_OMAT_gene
0.0
<html><body><title>AT2G32310.2</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u223231002000i/AT2G32310.2.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u223231002000i/AT2G32310.2.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u223231002000i/AT2G32310.2.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126512002000i">AT1G65120.2</a></td><td>0.920236</td><td>ubiquitin carboxyl-terminal hydrolase-related</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221267001000i">AT2G12670.1</a></td><td>0.906115</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u123642001000i">AT1G36420.1</a></td><td>0.878779</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u324331501000i">AT3G43315.1</a></td><td>0.871532</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523307501000i">AT5G33075.1</a></td><td>0.863872</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320671001000i">AT3G06710.1</a></td><td>0.861611</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525564001000i">AT5G55640.1</a></td><td>0.860518</td><td>unknown protein</td><td>OMAT5P114550</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421837201000i">AT4G18372.1</a></td><td>0.855865</td><td>small nuclear ribonucleoprotein-related / snRNP-related</td><td>OMAT4P104600</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220365001000i">AT2G03650.1</a></td><td>0.849666</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420766001000i">AT4G07660.1</a></td><td>0.848541</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420212001000i">AT4G02120.1</a></td><td>-0.85193</td><td>CTP synthase, putative / UTP--ammonia ligase, putative</td><td>OMAT4P000780</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521199001000i">AT5G11990.1</a></td><td>-0.836798</td><td>proline-rich family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421748601000i">AT4G17486.1</a></td><td>-0.825956</td><td>unknown protein</td><td>OMAT4P104330</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u122026001000i">AT1G20260.1</a></td><td>-0.800965</td><td>hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism</td><td>OMAT1P007430</td><td>-</td><td>OMAT1P106550</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321710001000i">AT3G17100.1</a></td><td>-0.795084</td><td>transcription factor</td><td>OMAT3P006400</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420946001000i">AT4G09460.1</a></td><td>-0.788451</td><td>ATMYB6</td><td>OMAT4P002270</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320254001000i">AT3G02540.1</a></td><td>-0.786166</td><td>RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)</td><td>OMAT3P100650</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523485001000i">AT5G34850.1</a></td><td>-0.776584</td><td>PAP26 (PURPLE ACID PHOSPHATASE 26)</td><td>OMAT5P108500,OMAT5P108510</td><td>[OMAT5P108500]-, [OMAT5P108510]-</td><td>OMAT5P009655,OMAT5P009660</td><td>[OMAT5P009655]-, [OMAT5P009660]-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521046001000i">AT5G10460.1</a></td><td>-0.774144</td><td>haloacid dehalogenase-like hydrolase family protein</td><td>OMAT5P003510</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126891001000i">AT1G68910.1</a></td><td>-0.773542</td><td>unknown protein</td><td>OMAT1P117270</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u223231002000i/AT2G32310.2-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0005739</td><td>mitochondrion</td><td>13/200</td><td>2.03</td><td>5.27e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>musculus</td><td>-</td><td>10/200</td><td>7.56</td><td>1.08e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>value</td><td>-</td><td>37/200</td><td>2.20</td><td>1.59e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transposable_element_gene</td><td>-</td><td>43/200</td><td>1.83</td><td>2.67e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transposable</td><td>-</td><td>43/200</td><td>1.83</td><td>2.69e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>element</td><td>-</td><td>43/200</td><td>1.80</td><td>4.20e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>retrotransposon</td><td>-</td><td>23/200</td><td>2.27</td><td>8.24e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transposase</td><td>-</td><td>12/200</td><td>2.64</td><td>7.02e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>molecular_function</td><td>-</td><td>69/200</td><td>1.37</td><td>1.32e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>mitochondrion</td><td>-</td><td>12/200</td><td>2.19</td><td>3.68e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[C]:Cellular component(Gene ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>